Author Topic: NAMD the Molecular Dynamics Simulator is a parallel molecular dynamics code  (Read 2050 times)

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NAMD - Molecular Dynamics Simulator - is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems.



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NAMD, recipient of a 2002 Gordon Bell Award, is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. Based on Charm++ parallel objects, NAMD scales to hundreds of processors on high-end parallel platforms and tens of processors on commodity clusters using gigabit ethernet. NAMD uses the popular molecular graphics program VMD for simulation setup and trajectory analysis, but is also file-compatible with AMBER, CHARMM, and X-PLOR. NAMD is distributed free of charge with source code. You can build NAMD yourself or download binaries for a wide variety of platforms. Our tutorials show you how to use NAMD and VMD for biomolecular modeling.

Download NAMD:

NAMD is a parallel, object-oriented molecular dynamics code designed for high-performance simulation of large biomolecular systems. Simulation preparation and analysis is integrated into the visualization package VMD. Visit the NAMD website for complete information and documentation.

Version 2.7b1 (2009-03-23) Platforms:

    * AIX-POWER (formerly AIX-RS6000)
    * AIX-POWER-MPI (also p690, formerly IBM-SP)
    * BlueGeneP (Blue Gene/P)
    * Linux-x86
    * Linux-x86-TCP (TCP may be better on gigabit)
    * Linux-x86_64 (Opteron, Athlon64, Intel EMT64)
    * Linux-x86_64-TCP (TCP may be better on gigabit)
    * Linux-Itanium-Altix (SGI Altix)
    * MacOSX-x86 (Mac OS X for Intel processors)
    * MacOSX-PPC (Mac OS X, 2.6b1 and newer need IBM libraries)
    * Solaris-Sparc
    * Solaris-x86_64
    * Win32 (Windows XP, etc.)
    * Source Code

Version 2.6 (2006-08-31) Platforms:

    * AIX-POWER (formerly AIX-RS6000)
    * AIX-POWER-MPI (also p690, formerly IBM-SP)
    * BlueGeneL (bypasses MPI for better scaling)
    * BlueGeneP-MPI (Blue Gene/P)
    * Linux-amd64-Clustermatic5-TCP (Clustermatic 5)
    * Linux-x86
    * Linux-x86-TCP (TCP may be better on gigabit)
    * Linux-x86_64 (Opteron, Athlon64, Intel EMT64)
    * Linux-x86_64-TCP (TCP may be better on gigabit)
    * Linux-i686-Clustermatic4 (Clustermatic 4 or 5)
    * Linux-i686-Clustermatic4-TCP (TCP may be better on gigabit)
    * Linux-i686-Scyld29 (Scyld Beowulf 29)
    * Linux-i686-Scyld29-TCP (TCP may be better on gigabit)
    * Linux-Itanium (Itanium)
    * Linux-Itanium-Altix (SGI Altix)
    * MacOSX-x86 (Mac OS X for Intel processors)
    * MacOSX-PPC (Mac OS X, 2.6b1 and newer need IBM libraries)
    * Origin2000 (any SGI, shared-memory only)
    * Origin2000-MPI (SGI MPI)
    * Solaris-Sparc
    * Tru64-Alpha
    * Tru64-Alpha-Elan (AlphaServer SC with Quadrics)
    * Tru64-Alpha-MPI (HP MPI, no Quadrics or Elan)
    * Win32 (Windows XP, etc.)
    * Source Code

NAMD tutorials here: http://www.ks.uiuc.edu/Training/Tutorials/

http://www.ks.uiuc.edu/Development/Download/download.cgi?PackageName=NAMD

 

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