Topic: AmplifX lets you test, manage and design your primers for PCR. Win/Mac X/Linux

[Software Santa]

AmplifX lets you test, manage and design your primers for PCR. Windows/Mac X/Linux

Main features

- Manage your primers

    Import or easily create primer lists
    Name,comment, sort primers
    Share simply primer lists (automatic lockout in read only mode of files yet opened by an other user)
    Automatic calculation of quality score (TM [Santa-Lucia method], length, GC%, autodimer, complexity, etc.)
    works with degenerate sequences

- Test your primers

    Localise your primers on target sequences (main file formats supported and "intelligent" copy-paste)
    Prediction of amplified sequences
    Interactive graphic map
    Pertinent informations on matches and amplicons (TM, size, predicted dimers, etc.)

- Design your primers

    Simple and intuitive interface to design new primers for amplifying a fragment choosing the amplicon size and/or the position
    Many of design options
New features

- The Mac version is now a Cocoa application (compatible Mac OS 10.9 Mavericks and Retina displays)
- Very big sequences support (> 1 million nucleotides)
- Huge improvment in speed for almost all time consuming operations: sequence and primer list loading, match searches, primer design, ...
- The program is now distributed as a multilingual bundle (still only in english and french but translators are welcome)
- Multi-criteria sorting of primer list (see the new menu "primers > Sort using multiple criteria...")
- Ability to change the primer order in the list by drag and drop
- New interface element (slider) in the main window that allow to quickly change the required number of perfect matching 3’end nucleotides in the match search alogorithm (without going to the Preference window)
- The menu "paste complement strand" now works into the field "use this primer" in the primer design window.
- Behavior improvment of the menu "Undo"
- Graphic view zooming improvment
- And a lot of bug fixes and algorithm corrections!



Vous cherchez la version française d’AmplifX : cliquer sur le lien "Français" en haut à droite de la page !
AmplifX
Manage, test and design your primers for PCR
Version 1.7.0
(Updated November 21 2013)

 

Main features

- Manage your primers

    Import or easily create primer lists
    Name,comment, sort primers
    Share simply primer lists (automatic lockout in read only mode of files yet opened by an other user)
    Automatic calculation of quality score (TM [Santa-Lucia method], length, GC%, autodimer, complexity, etc.)
    works with degenerate sequences

- Test your primers

    Localise your primers on target sequences (main file formats supported and "intelligent" copy-paste)
    Prediction of amplified sequences
    Interactive graphic map
    Pertinent informations on matches and amplicons (TM, size, predicted dimers, etc.)

- Design your primers

    Simple and intuitive interface to design new primers for amplifying a fragment choosing the amplicon size and/or the position
    Many of design options

New features

- The Mac version is now a Cocoa application (compatible Mac OS 10.9 Mavericks and Retina displays)
- Very big sequences support (> 1 million nucleotides)
- Huge improvment in speed for almost all time consuming operations: sequence and primer list loading, match searches, primer design, ...
- The program is now distributed as a multilingual bundle (still only in english and french but translators are welcome)
- Multi-criteria sorting of primer list (see the new menu "primers > Sort using multiple criteria...")
- Ability to change the primer order in the list by drag and drop
- New interface element (slider) in the main window that allow to quickly change the required number of perfect matching 3’end nucleotides in the match search alogorithm (without going to the Preference window)
- The menu "paste complement strand" now works into the field "use this primer" in the primer design window.
- Behavior improvment of the menu "Undo"
- Graphic view zooming improvment
- And a lot of bug fixes and algorithm corrections!



Get AmplifX 1.7.0

Zip - 2.4 Mb
AmplifX Mac
    Mac OS 10.5 ... 10.9 (Cocoa) Multingual (Fr, En)

Zip - 2.4 Mb
AmplifX Windows
    XP ... Windows 8 - Multingu. (Fr, En)

Zip - 3.4 Mb
AmplifX Linux
    Linux 32 bits (GNOME)

 

"Old Mac" (AmplifX Version 1.6.3)

[Updated Nov, 25 2013] These versions allows owners of old Mac to continue to work with AmplifX: version 1.6.3 doesn’t force the user to instal the new 1.7.0 release.

http://crn2m.univ-mrs.fr/recherche/equipe-t-brue/jullien-nicolas/programmation/amplifx/amplifx-575?lang=en

Categories: Educational - Chemistry - Genetics - Mac System X - Panther - Tiger - PPC - MacIntel - Windows